STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc25Tetratricopeptide repeat domain 25. (556 aa)    
Predicted Functional Partners:
ENSECRP00000009378
annotation not available
   
 0.967
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.963
ccdc151
Coiled-coil domain containing 151.
  
 0.963
armc4
Armadillo repeat containing 4.
  
 0.927
tekt3
Tektin 3.
   
 
 0.803
tep1
Telomerase associated protein 1.
   
 0.800
tep1-2
Telomerase associated protein 1.
   
 0.800
cfap53
Cilia and flagella associated protein 53.
   
 0.795
efcab1
EF-hand calcium binding domain 1.
    
 0.795
ENSECRP00000029845
annotation not available
    
 0.795
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.