STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbx6T-box transcription factor 6. (412 aa)    
Predicted Functional Partners:
ENSECRP00000004969
annotation not available
   
 0.766
wnt3a
Wnt family member 3A.
    
 0.627
sfrp5
Secreted frizzled related protein 5.
      
 0.561
wnt3
Wnt family member 3.
    
 0.542
yaf2
YY1 associated factor 2.
    
  0.526
ENSECRP00000017570
annotation not available
      
 0.524
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.523
gata4
GATA binding protein 4.
   
 0.510
LOC114650313
T-box transcription factor TBX19-like.
  
 
 
0.509
tbx21
T-box transcription factor 21.
  
 
 
0.485
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.