STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114661714NIF3-like protein 1. (388 aa)    
Predicted Functional Partners:
pts
6-pyruvoyltetrahydropterin synthase.
    
 0.889
gch1
GTP cyclohydrolase 1.
    
 0.878
LOC114665703
GTP cyclohydrolase 1-like.
    
 0.878
nudt15
Nudix hydrolase 15.
    
  0.861
hddc3
HD domain containing 3.
  
 
  0.861
mocs1
Molybdenum cofactor synthesis 1.
    
  0.854
rrm1
Ribonucleotide reductase catalytic subunit M1.
  
 
  0.810
pklr
Pyruvate kinase L/R.
   
 0.758
parp6
poly(ADP-ribose) polymerase family member 6.
   
 0.758
parp8
poly(ADP-ribose) polymerase family member 8.
   
 0.758
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.