STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpc4apTransient receptor potential cation channel subfamily C member 4 associated protein. (768 aa)    
Predicted Functional Partners:
ddb1
Damage specific DNA binding protein 1.
    
 0.990
dcaf4
DDB1 and CUL4 associated factor 4.
   
 
 0.969
dcaf5
DDB1 and CUL4 associated factor 5.
     
 0.968
dcaf6
DDB1 and CUL4 associated factor 6.
    
 0.965
dcaf8
DDB1 and CUL4 associated factor 8.
    
 0.957
dda1
DET1 and DDB1 associated 1.
    
  0.949
dcaf12
DDB1 and CUL4 associated factor 12.
     
 0.945
ddb2
Damage specific DNA binding protein 2.
     
 0.943
rbx1
Ring-box 1.
    
 0.943
cul4a
Cullin 4A.
    
 0.908
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.