STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nap1l4Nucleosome assembly protein 1 like 4. (370 aa)    
Predicted Functional Partners:
LOC114648650
Histone H2A.V.
   
 
 0.834
LOC114654554
Histone H2A.Z.
   
 
 0.834
ipo9
Importin 9.
   
 
 0.828
rps6
Ribosomal protein S6.
   
 
 0.822
sdad1
SDA1 domain containing 1.
    
 
 0.786
brsk2
BR serine/threonine kinase 2.
    
 
 0.662
LOC114660688
Serine/threonine-protein kinase BRSK2-like.
    
 
 0.662
ube2o
Ubiquitin conjugating enzyme E2 O.
    
 
 0.648
nap1l1
Nucleosome assembly protein 1 like 1.
  
 
0.631
ENSECRP00000009790
annotation not available
   
   0.622
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.