STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
krt18Keratin 18. (428 aa)    
Predicted Functional Partners:
unc79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.858
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.836
LOC114650950
E3 SUMO-protein ligase RanBP2-like.
   
 0.745
ENSECRP00000027989
annotation not available
   
  0.695
rims2
Regulating synaptic membrane exocytosis 2.
    
  0.694
ENSECRP00000000849
annotation not available
    
  0.648
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.641
ash2l
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.638
kdm6b
Lysine demethylase 6B.
    
 0.634
kdm6a
Lysine demethylase 6A.
    
 0.634
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.