STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf512bZinc finger protein 512B. (680 aa)    
Predicted Functional Partners:
gtf3c3
General transcription factor IIIC subunit 3.
    
 0.920
gtf3c4
General transcription factor IIIC subunit 4.
    
 0.916
gtf3c1
General transcription factor IIIC subunit 1.
   
 0.902
gtf3c5
General transcription factor IIIC subunit 5.
   
 0.897
brf2
BRF2 RNA polymerase III transcription initiation factor subunit.
   
 
  0.737
brf1
BRF1 RNA polymerase III transcription initiation factor subunit.
   
 
  0.729
polr3c
RNA polymerase III subunit C.
    
  0.704
polr3b
RNA polymerase III subunit B.
    
  0.659
rhov
Ras homolog family member V.
    
  0.642
ENSECRP00000008920
annotation not available
    
 0.640
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.