STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secAProtein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (881 aa)    
Predicted Functional Partners:
R7QA03_CHOCR
Uncharacterized protein.
    
 0.777
R7QKQ8_CHOCR
Uncharacterized protein.
   
 0.768
R7Q0U1_CHOCR
Uncharacterized protein.
    
  0.739
R7QID0_CHOCR
Plus3 domain-containing protein.
    
 0.505
R7Q5F4_CHOCR
Serine/threonine protein kinase Endoplasmic reticulum membrane.
    
 
 0.432
R7Q5P0_CHOCR
Serine/threonine protein kinase.
    
 
 0.432
R7QSN9_CHOCR
Serine/threonine protein kinase.
    
 
 0.432
R7QKE2_CHOCR
TPR_REGION domain-containing protein.
   
 
 0.415
R7QNL4_CHOCR
Ketol-acid reductoisomerase; Belongs to the ketol-acid reductoisomerase family.
    
 
 0.406
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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