STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7Q3K6_CHOCRWD_REPEATS_REGION domain-containing protein. (641 aa)    
Predicted Functional Partners:
R7Q616_CHOCR
MI domain-containing protein.
   
 0.887
R7QJ34_CHOCR
WD_REPEATS_REGION domain-containing protein.
   
  0.867
R7QVS9_CHOCR
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.826
R7QDM5_CHOCR
Uncharacterized protein.
   
 
 0.819
R7QFK3_CHOCR
Uncharacterized protein.
 
 
 0.819
R7QJF5_CHOCR
Similarity to pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.
 
 
 0.819
R7Q7N3_CHOCR
Coiled-coil domain-containing protein, putative.
    
  0.804
R7QLB2_CHOCR
Pre-mRNA-splicing factor Syf2, putative.
    
  0.804
R7Q9H2_CHOCR
Putative Pre-mRNA-processing factor 19.
  
 
 0.776
R7QKK6_CHOCR
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  0.768
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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