STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7Q573_CHOCRATP-dependent DNA helicase recQ. (280 aa)    
Predicted Functional Partners:
R7Q9S7_CHOCR
Uncharacterized protein.
  
 0.671
R7QU31_CHOCR
Uncharacterized protein.
   
 0.590
R7QDG4_CHOCR
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.584
R7QM74_CHOCR
RMI1_N domain-containing protein.
    
 0.584
R7QFB1_CHOCR
ATP-dependent DNA helicase RecQ.
  
     0.536
R7QLQ9_CHOCR
RECA_2 domain-containing protein.
   
 0.513
R7Q9J1_CHOCR
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.509
R7Q6W3_CHOCR
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
   
 0.508
R7Q9A8_CHOCR
DNA topoisomerase I Mitochondrial.
   
 0.508
R7Q9P7_CHOCR
DNA mismatch repair protein MLH1.
   
 0.499
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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