STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7Q6P4_CHOCRWD40-repeat containing protein. (1022 aa)    
Predicted Functional Partners:
R7QNI1_CHOCR
RING-box protein 1a.
    
 0.609
R7QD44_CHOCR
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.546
R7QTM3_CHOCR
Skp1 domain-containing protein.
    
 0.546
R7QRM1_CHOCR
PI3K/PI4K domain-containing protein.
    
 0.503
rpl2
50S ribosomal protein L2.
    
  0.464
R7QJN7_CHOCR
Ubiquitin-like domain-containing protein.
    
 0.464
R7QM02_CHOCR
Ribosomal_L2_C domain-containing protein.
    
  0.464
R7Q772_CHOCR
HECT domain-containing protein.
   
 0.453
R7QQT8_CHOCR
Ribosomal-ubiquitin fusion protein.
    
  0.453
R7Q2H4_CHOCR
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.421
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.