STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7Q6P5_CHOCRSimilar to HIV TAT specific factor 1. (376 aa)    
Predicted Functional Partners:
R7QG63_CHOCR
Uncharacterized protein.
   
 
 0.965
R7QHD4_CHOCR
Probable ATP-dependent RNA helicase DDX46-like.
   
 0.933
R7QFS3_CHOCR
Matrin-type domain-containing protein.
   
 
 0.920
R7Q6T1_CHOCR
Putative splicing factor 3B, subunit 3, SF3B3.
    
 
 0.850
R7QGY8_CHOCR
PSP domain-containing protein.
   
 
 0.826
R7QKP6_CHOCR
Sm protein, snRNP core protein, SmF.
   
   0.808
R7QC89_CHOCR
Splicing factor SF1, predicted.
     
 0.779
R7Q9S4_CHOCR
Uncharacterized protein.
    
 
 0.709
R7Q2G9_CHOCR
Putative splicing factor 3b, subunit 1, SF3b1.
    
 
 0.698
R7Q621_CHOCR
Uncharacterized protein.
    
 
 0.698
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.