STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QC48_CHOCRUncharacterized protein; Belongs to the DEAD box helicase family. (481 aa)    
Predicted Functional Partners:
R7QHP5_CHOCR
Sas10 domain-containing protein.
   
  0.996
R7QBI3_CHOCR
NUC153 domain-containing protein.
   
 
 0.981
R7Q719_CHOCR
WD40-repeat containing protein.
   
 0.962
R7QFJ9_CHOCR
KH domain-containing protein.
   
 0.936
R7QN65_CHOCR
Uncharacterized protein.
   
 0.929
R7QHE7_CHOCR
Uncharacterized protein.
   
 0.923
R7QBA8_CHOCR
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.914
R7QMM3_CHOCR
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 0.902
R7QTL2_CHOCR
DEAD (Asp-Glu-Ala-Asp) box polypeptide; Belongs to the DEAD box helicase family.
  
 
0.884
R7QAF4_CHOCR
BP28CT domain-containing protein.
   
  0.881
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.