STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QEE3_CHOCRPutative vesicle transport protein; Belongs to the synaptobrevin family. (226 aa)    
Predicted Functional Partners:
R7Q2M4_CHOCR
Syntaxin; Belongs to the syntaxin family.
   
 0.999
R7QR51_CHOCR
Bet1.
   
 0.998
R7QEZ8_CHOCR
Syn18.
   
 0.997
R7QFE4_CHOCR
Uncharacterized protein; Belongs to the synaptobrevin family.
    
0.995
R7QK10_CHOCR
Uncharacterized protein.
    
 0.995
R7Q8M3_CHOCR
Uncharacterized protein.
    
 
 0.985
R7QM93_CHOCR
Putative Vesicle transport v-SNARE.
   
 
 0.983
R7Q6Z5_CHOCR
Uncharacterized protein.
   
 0.982
R7QS95_CHOCR
Uncharacterized protein.
    
 0.950
R7QJ89_CHOCR
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.942
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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