STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QGW8_CHOCRWD_REPEATS_REGION domain-containing protein. (399 aa)    
Predicted Functional Partners:
R7QG45_CHOCR
Uncharacterized protein.
   
 0.975
R7QP53_CHOCR
Nup54 domain-containing protein.
   
 0.959
R7QA75_CHOCR
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.949
R7QGK8_CHOCR
Uncharacterized protein.
    
 0.900
R7QKX8_CHOCR
Uncharacterized protein.
   
 0.889
R7QF23_CHOCR
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.872
R7Q618_CHOCR
Nuclear pore protein.
   
 0.870
R7Q9V9_CHOCR
Nuclear pore protein.
   
 0.870
R7Q818_CHOCR
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.868
R7QQW7_CHOCR
Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family.
   
 0.868
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
Server load: low (20%) [HD]