STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QIZ4_CHOCRMidasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5324 aa)    
Predicted Functional Partners:
R7Q7X5_CHOCR
UBX domain-containing protein.
   
 
  0.633
R7Q512_CHOCR
Uncharacterized protein.
    
 0.594
R7QN78_CHOCR
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.571
R7QQD6_CHOCR
Small nuclear ribonucleoprotein Sm D2.
    
 0.564
R7QQQ5_CHOCR
DNA polymerase.
   
 0.551
R7QU35_CHOCR
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.543
R7QKP6_CHOCR
Sm protein, snRNP core protein, SmF.
    
  0.531
R7QLE2_CHOCR
Small nuclear ribonucleoprotein G.
    
  0.510
R7QA43_CHOCR
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.470
R7QC97_CHOCR
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.440
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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