STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QKQ0_CHOCRSMC_N domain-containing protein. (1207 aa)    
Predicted Functional Partners:
R7Q3T2_CHOCR
SMC_N domain-containing protein.
   
0.997
R7QRH4_CHOCR
SP-RING-type domain-containing protein.
    
 0.997
R7QHC7_CHOCR
MAGE domain-containing protein.
   
 0.989
R7Q716_CHOCR
Structural maintenance of chromosomes protein.
   
 0.913
R7QBF1_CHOCR
SCD domain-containing protein.
   
 0.905
R7Q858_CHOCR
Structural maintenance of chromosomes protein.
   
 0.820
R7QN73_CHOCR
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.804
R7QIH4_CHOCR
Rad60-SLD domain-containing protein.
   
 0.797
R7QUS6_CHOCR
Uncharacterized protein.
   
 0.797
R7QN05_CHOCR
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.
   
 0.785
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.