STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QL95_CHOCRTryptophan synthase subunit beta. (466 aa)    
Predicted Functional Partners:
R7Q8M7_CHOCR
Indole-3-glycerol phosphate synthase.
 
 
 0.999
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
 
 0.996
R7QDC1_CHOCR
IGPS domain-containing protein.
  
 
 0.995
R7QEP2_CHOCR
Uncharacterized protein.
  
 
 0.963
R7Q8V1_CHOCR
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
     
 0.933
R7QGY1_CHOCR
Serine hydroxymethyltransferase, cytosolic (Glycine hydroxymethyltransferase).
     
 0.933
S0F2S0_CHOCR
Serine hydroxymethyltransferase, cytosolic (Glycine hydroxymethyltransferase).
     
 0.933
R7Q8R7_CHOCR
Serine racemase CcSR.
  
 0.929
R7QF37_CHOCR
Similar to serine dehydratase.
  
 0.929
R7QR03_CHOCR
Threonine dehydratase.
  
 0.929
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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