STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QPH5_CHOCRCYCLIN domain-containing protein. (610 aa)    
Predicted Functional Partners:
R7QQV6_CHOCR
Ku domain-containing protein.
    
 0.887
R7Q5C6_CHOCR
Uncharacterized protein.
    
 0.823
R7QDZ0_CHOCR
Ku core domain, Ku70 family.
    
 0.769
R7QI51_CHOCR
Glycerophosphoryl diester phosphodiesterase.
    
 
 0.754
R7QD29_CHOCR
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 0.602
R7QKI6_CHOCR
DNA ligase.
    
 0.499
R7QQL7_CHOCR
Putative ATP dependent DNA ligase.
    
 0.499
R7QLS7_CHOCR
Uncharacterized protein.
   
 
 0.465
R7Q7F6_CHOCR
Uncharacterized protein.
      
 0.403
R7QIV6_CHOCR
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
     
 0.403
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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