STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QPP6_CHOCRUncharacterized protein. (265 aa)    
Predicted Functional Partners:
R7QRR2_CHOCR
WD_REPEATS_REGION domain-containing protein.
   
 0.984
R7Q3X0_CHOCR
Box H/ACA snoRNP rRNA pseudouridine syntase component dyskerin.
  
 
 0.752
R7QRE0_CHOCR
tRNA (adenine(58)-N(1))-methyltransferase.
  
 
 0.717
R7QMM3_CHOCR
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 
 0.709
R7QSB0_CHOCR
Uncharacterized protein.
   
   0.634
R7QJI5_CHOCR
Uncharacterized protein.
   
  
 0.631
R7Q0T5_CHOCR
SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.626
R7Q665_CHOCR
WD_REPEATS_REGION domain-containing protein.
   
    0.620
R7Q5K4_CHOCR
SAM-dependent MTase TRM10-type domain-containing protein.
   
 
 0.609
R7QC48_CHOCR
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
   0.603
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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