STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QPZ2_CHOCRRab GDP dissociation inhibitor; Belongs to the Rab GDI family. (459 aa)    
Predicted Functional Partners:
R7QIZ7_CHOCR
Small GTP-binding protein of Rab family, Rab6.
   
 0.983
R7QSY4_CHOCR
GTP-binding protein yptV5.
    
 0.981
R7QVA0_CHOCR
Uncharacterized protein.
   
 0.979
R7Q4F6_CHOCR
Small GTPase.
   
 0.957
R7QG41_CHOCR
Rab1.
   
 0.948
R7QUA5_CHOCR
Uncharacterized protein.
   
 0.948
R7QD81_CHOCR
Rab family GTPase.
   
 0.855
R7Q9M2_CHOCR
14-3-3 protein; Belongs to the 14-3-3 family.
  
 
 0.776
R7Q5U4_CHOCR
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
   
 0.734
R7Q7R3_CHOCR
14-3-3 protein; Belongs to the 14-3-3 family.
   
 
 0.732
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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