STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QQZ5_CHOCRWD40-repeat containing protein. (1367 aa)    
Predicted Functional Partners:
R7Q5P1_CHOCR
U4/U6 small nuclear ribonucleoprotein Prp3, putative.
   
 0.642
R7QQB1_CHOCR
Elongation factor Tu GTP-binding domain-containing protein 2.
   
 0.540
R7QF41_CHOCR
U4/U6 small nuclear ribonucleoprotein Prp31, putative.
   
 0.534
R7QQT6_CHOCR
Small nuclear ribonucleoprotein Sm D3.
   
  0.526
R7Q9A7_CHOCR
Similar to PRP6 pre-mRNA splicing factor 6 homolog.
   
 0.510
R7QE84_CHOCR
Pre-mRNA processing 8 protein, PRP8.
   
 0.506
R7QKP6_CHOCR
Sm protein, snRNP core protein, SmF.
   
  0.493
R7QU35_CHOCR
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.486
R7QQK6_CHOCR
Uncharacterized protein.
    
 0.485
R7QQD6_CHOCR
Small nuclear ribonucleoprotein Sm D2.
   
 0.484
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.