R7QTF7_CHOCR protein (Chondrus crispus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R7QTF7_CHOCR

3-oxoacyl-(Acyl-carrier-protein) reductase. (227 aa)

Predicted Functional Partners:

R7Q5X1_CHOCR

0.697

R7QB10_CHOCR

0.603

R7QDM9_CHOCR

0.528

R7QBC1_CHOCR

0.515

R7QMD9_CHOCR

0.513

R7Q9D4_CHOCR

0.495

R7QB30_CHOCR

0.495

R7QFZ8_CHOCR

0.483

R7QBK8_CHOCR

0.476

R7QDD2_CHOCR

0.476

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q5X1_CHOCR	R7Q9D4_CHOCR	R7Q5X1	R7Q9D4	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.630
R7Q5X1_CHOCR	R7QB10_CHOCR	R7Q5X1	R7QB10	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	[acyl-carrier-protein] S-malonyltransferase.	0.618
R7Q5X1_CHOCR	R7QB30_CHOCR	R7Q5X1	R7QB30	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Nitrate reductase, NIA2.	0.630
R7Q5X1_CHOCR	R7QBC1_CHOCR	R7Q5X1	R7QBC1	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.529
R7Q5X1_CHOCR	R7QDM9_CHOCR	R7Q5X1	R7QDM9	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	3-oxoacyl-[acyl-carrier-protein] reductase.	0.763
R7Q5X1_CHOCR	R7QFZ8_CHOCR	R7Q5X1	R7QFZ8	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Dehydrogenase/reductase SDR family member 4.	0.763
R7Q5X1_CHOCR	R7QMD9_CHOCR	R7Q5X1	R7QMD9	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	3-oxoacyl-[acyl-carrier-protein] synthase II, partial sequence.	0.529
R7Q5X1_CHOCR	R7QTF7_CHOCR	R7Q5X1	R7QTF7	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	3-oxoacyl-(Acyl-carrier-protein) reductase.	0.697
R7Q9D4_CHOCR	R7Q5X1_CHOCR	R7Q9D4	R7Q5X1	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.630
R7Q9D4_CHOCR	R7QB30_CHOCR	R7Q9D4	R7QB30	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Nitrate reductase, NIA2.	0.999
R7Q9D4_CHOCR	R7QBK8_CHOCR	R7Q9D4	R7QBK8	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Urea amidolyase.	0.574
R7Q9D4_CHOCR	R7QDD2_CHOCR	R7Q9D4	R7QDD2	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Allophanate hydrolase.	0.574
R7Q9D4_CHOCR	R7QDM9_CHOCR	R7Q9D4	R7QDM9	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	3-oxoacyl-[acyl-carrier-protein] reductase.	0.495
R7Q9D4_CHOCR	R7QFZ8_CHOCR	R7Q9D4	R7QFZ8	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Dehydrogenase/reductase SDR family member 4.	0.495
R7Q9D4_CHOCR	R7QTF7_CHOCR	R7Q9D4	R7QTF7	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	3-oxoacyl-(Acyl-carrier-protein) reductase.	0.495
R7QB10_CHOCR	R7Q5X1_CHOCR	R7QB10	R7Q5X1	[acyl-carrier-protein] S-malonyltransferase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.618
R7QB10_CHOCR	R7QBC1_CHOCR	R7QB10	R7QBC1	[acyl-carrier-protein] S-malonyltransferase.	Beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.998
R7QB10_CHOCR	R7QBK8_CHOCR	R7QB10	R7QBK8	[acyl-carrier-protein] S-malonyltransferase.	Urea amidolyase.	0.728
R7QB10_CHOCR	R7QDD2_CHOCR	R7QB10	R7QDD2	[acyl-carrier-protein] S-malonyltransferase.	Allophanate hydrolase.	0.728
R7QB10_CHOCR	R7QDM9_CHOCR	R7QB10	R7QDM9	[acyl-carrier-protein] S-malonyltransferase.	3-oxoacyl-[acyl-carrier-protein] reductase.	0.445