STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPE_0069Hypothetical protein. (243 aa)    
Predicted Functional Partners:
PEPE_0070
Hypothetical protein.
       0.761
PEPE_0067
Glycosyltransferase.
  
  
 0.632
PEPE_0068
Hypothetical protein.
       0.583
PEPE_0568
Lipopolysaccharide synthesis sugar transferase.
  
  
 0.580
PEPE_0064
Hypothetical protein.
  
  
 0.577
PEPE_1607
ABC-type polysaccharide/polyol phosphate export system, permease component.
  
  
 0.576
PEPE_0066
Hypothetical protein.
       0.519
PEPE_0065
Hypothetical protein.
       0.517
secA2
Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
       0.478
PEPE_0063
Protein translocase subunit secY/sec61 alpha; Belongs to the SecY/SEC61-alpha family.
       0.474
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.