STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPE_0389Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-. (246 aa)    
Predicted Functional Partners:
PEPE_0392
Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.
 0.998
PEPE_0391
Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.
 0.997
PEPE_0390
Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.
 
 0.991
PEPE_1137
Arginine/lysine/histidine transporter system substrate-binding protein; TC 3.A.1.3.-; TC 3.A.1.3.-.
 
 0.963
PEPE_1286
Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-.
 
 0.937
PEPE_1068
Glutamine transport system permease protein; TC 3.A.1.3.-; TC 3.A.1.3.-.
 
 0.908
PEPE_1658
ABC-type multidrug transport system, ATPase and permease component.
     
0.828
PEPE_1284
Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.
 
 
 0.806
PEPE_1337
ABC-type multidrug transport system, ATPase and permease component.
     
0.601
PEPE_1336
ABC-type multidrug transport system, ATPase and permease component.
     
0.507
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
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