STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPE_0483Mn2+ and Fe2+ transporter of the NRAMP family. (428 aa)    
Predicted Functional Partners:
PEPE_0484
Ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate reductase class III catalytic subunit.
     
 0.721
PEPE_0486
Iron-regulated ABC transporter ATPase subunit SufC.
  
  
 0.719
PEPE_0485
Ribonucleoside-triphosphate reductase class III activase subunit; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
       0.717
PEPE_0487
Fe-S cluster assembly ABC-type transport system, permease component.
  
  
 0.630
PEPE_0490
Iron-regulated ABC transporter membrane component SufB.
  
  
 0.614
PEPE_0489
Fe-S cluster formation protein, NifU-like protein.
  
  
 0.600
PEPE_0488
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
    0.587
PEPE_0291
ABC-type Mn2+/Zn2+ transport system, permease component.
  
  
 0.480
PEPE_1666
Hypothetical protein.
  
     0.449
PEPE_0045
Mn2+ and Fe2+ transporter of the NRAMP family.
  
     0.419
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
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