Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PEPE_0734 | PEPE_0735 | PEPE_0734 | PEPE_0735 | Hypothetical protein. | Glycerophosphoryl diester phosphodiesterase. | 0.576 |
PEPE_0734 | PEPE_0737 | PEPE_0734 | PEPE_0737 | Hypothetical protein. | Cystathionine beta-lyase family protein. | 0.628 |
PEPE_0734 | PEPE_0738 | PEPE_0734 | PEPE_0738 | Hypothetical protein. | Glutamine synthetase repressor. | 0.516 |
PEPE_0734 | PEPE_0739 | PEPE_0734 | PEPE_0739 | Hypothetical protein. | L-glutamine synthetase. | 0.480 |
PEPE_0734 | miaA | PEPE_0734 | PEPE_0736 | Hypothetical protein. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.675 |
PEPE_0735 | PEPE_0734 | PEPE_0735 | PEPE_0734 | Glycerophosphoryl diester phosphodiesterase. | Hypothetical protein. | 0.576 |
PEPE_0735 | PEPE_0737 | PEPE_0735 | PEPE_0737 | Glycerophosphoryl diester phosphodiesterase. | Cystathionine beta-lyase family protein. | 0.803 |
PEPE_0735 | PEPE_0738 | PEPE_0735 | PEPE_0738 | Glycerophosphoryl diester phosphodiesterase. | Glutamine synthetase repressor. | 0.584 |
PEPE_0735 | PEPE_0739 | PEPE_0735 | PEPE_0739 | Glycerophosphoryl diester phosphodiesterase. | L-glutamine synthetase. | 0.525 |
PEPE_0735 | miaA | PEPE_0735 | PEPE_0736 | Glycerophosphoryl diester phosphodiesterase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.816 |
PEPE_0737 | PEPE_0734 | PEPE_0737 | PEPE_0734 | Cystathionine beta-lyase family protein. | Hypothetical protein. | 0.628 |
PEPE_0737 | PEPE_0735 | PEPE_0737 | PEPE_0735 | Cystathionine beta-lyase family protein. | Glycerophosphoryl diester phosphodiesterase. | 0.803 |
PEPE_0737 | PEPE_0738 | PEPE_0737 | PEPE_0738 | Cystathionine beta-lyase family protein. | Glutamine synthetase repressor. | 0.631 |
PEPE_0737 | PEPE_0739 | PEPE_0737 | PEPE_0739 | Cystathionine beta-lyase family protein. | L-glutamine synthetase. | 0.565 |
PEPE_0737 | miaA | PEPE_0737 | PEPE_0736 | Cystathionine beta-lyase family protein. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.886 |
PEPE_0738 | PEPE_0734 | PEPE_0738 | PEPE_0734 | Glutamine synthetase repressor. | Hypothetical protein. | 0.516 |
PEPE_0738 | PEPE_0735 | PEPE_0738 | PEPE_0735 | Glutamine synthetase repressor. | Glycerophosphoryl diester phosphodiesterase. | 0.584 |
PEPE_0738 | PEPE_0737 | PEPE_0738 | PEPE_0737 | Glutamine synthetase repressor. | Cystathionine beta-lyase family protein. | 0.631 |
PEPE_0738 | PEPE_0739 | PEPE_0738 | PEPE_0739 | Glutamine synthetase repressor. | L-glutamine synthetase. | 0.958 |
PEPE_0738 | miaA | PEPE_0738 | PEPE_0736 | Glutamine synthetase repressor. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.676 |
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