STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPE_0801Phosphodiesterase, calcineurin family. (609 aa)    
Predicted Functional Partners:
PEPE_0798
Hypothetical protein.
 
   0.954
PEPE_0797
Minor tail protein gp26-like protein.
 
   0.953
PEPE_0799
Enterolysin A, Metallo peptidase, MEROPS family M23B.
 
  
 0.949
PEPE_0796
Hypothetical protein.
       0.785
PEPE_0800
Hypothetical protein.
       0.785
PEPE_0795
Hypothetical protein.
 
     0.769
PEPE_0802
Hypothetical protein.
       0.752
PEPE_0803
Hypothetical protein.
       0.752
PEPE_0804
Hypothetical protein.
       0.752
PEPE_0793
Hypothetical protein.
 
 
   0.742
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.