STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPE_1007Restriction endonuclease. (169 aa)    
Predicted Functional Partners:
PEPE_1005
Phage terminase-like protein, large subunit.
 
  
 0.944
PEPE_1006
Phage terminase, small subunit.
 
    0.936
PEPE_1003
Hypothetical protein.
 
  
 0.911
PEPE_1001
Predicted phage phi-C31 gp36 major capsid-like protein.
 
  
 0.887
PEPE_1002
Protease subunit of ATP-dependent Clp protease.
 
    0.887
PEPE_1000
Hypothetical protein.
 
     0.854
PEPE_0997
Hypothetical protein.
 
     0.843
PEPE_0998
Hypothetical protein.
 
     0.839
PEPE_0996
Hypothetical protein.
 
     0.831
PEPE_0993
SLT domain protein.
 
  
 0.827
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.