Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PEPE_1237Type II secretory pathway/competence component. (336 aa)    
Predicted Functional Partners:
PEPE_1238
Type II secretory pathway/competence component, ATPase.
 
 
 0.999
PEPE_1236
Competence protein ComGC.
 
  
 0.996
PEPE_1235
Hypothetical protein.
  
  
 0.937
PEPE_1149
Predicted hydrolase (metallo-beta-lactamase superfamily).
 
  
 0.884
PEPE_1151
DNA uptake protein related DNA-binding protein.
  
  
 0.875
PEPE_0425
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein).
   
  
 0.835
PEPE_1231
Adenine-specific DNA methylase.
 
     0.726
PEPE_0008
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
    0.609
PEPE_1233
Hypothetical protein.
       0.583
PEPE_0716
Preprotein translocase subunit YidC.
 
   
 0.568
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
Server load: low (20%) [HD]