STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS1378Putative pseudouridine synthase (inferred by orthology to a C. elegans protein). (510 aa)    
Predicted Functional Partners:
NBR_LOCUS433
39S ribosomal protein L21, mitochondrial (inferred by orthology to a human protein).
  
   0.944
NBR_LOCUS9009
39S ribosomal protein L13, mitochondrial (inferred by orthology to a human protein).
   
   0.944
NBR_LOCUS15498
Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
   
   0.943
NBR_LOCUS8243
Uncharacterized protein.
  
   0.942
NBR_LOCUS19598
39S ribosomal protein L15, mitochondrial (inferred by orthology to a human protein).
   
   0.940
NBR_LOCUS19599
Uncharacterized protein.
   
   0.940
NBR_LOCUS20150
Nucleolar complex protein 3 homolog.
   
   0.940
NBR_LOCUS589
KOW domain-containing protein.
   
   0.939
NBR_LOCUS13159
tRNA modification GTPase GTPBP3, mitochondrial (inferred by orthology to a human protein).
   
   0.939
NBR_LOCUS11154
Putative 39S ribosomal protein L3, mitochondrial (inferred by orthology to a C. elegans protein).
    
   0.937
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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