STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS1457Ubiquitin carboxyl-terminal hydrolase (inferred by orthology to a S. mansoni protein). (248 aa)    
Predicted Functional Partners:
NBR_LOCUS17097
Ubiquitin-40S ribosomal protein S27a (inferred by orthology to a human protein).
    
 0.744
NBR_LOCUS18797
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.742
NBR_LOCUS9433
DNA excision repair protein ERCC-1 (inferred by orthology to a human protein).
    
 0.714
NBR_LOCUS8115
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.708
NBR_LOCUS2853
Ubiquitin-like domain-containing protein.
    
 0.670
NBR_LOCUS3413
Ubiquitin-like domain-containing protein.
    
 0.670
NBR_LOCUS4752
Uncharacterized protein.
    
 0.670
NBR_LOCUS6055
UBA domain-containing protein.
    
 0.670
NBR_LOCUS11365
Ubiquitin-like domain-containing protein.
    
 0.670
NBR_LOCUS4361
Histone H2A; Belongs to the histone H2A family.
    
 0.632
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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