STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS3300Uncharacterized protein. (164 aa)    
Predicted Functional Partners:
NBR_LOCUS8187
Vesicle-fusing ATPase (inferred by orthology to a C. elegans protein).
    
  0.560
NBR_LOCUS3301
Uncharacterized protein.
 
      0.558
NBR_LOCUS7414
Ras-related protein Rab-7a (inferred by orthology to a human protein).
    
  0.556
NBR_LOCUS11335
Vps53_N domain-containing protein.
     
 0.506
NBR_LOCUS5651
Vesicle-associated membrane protein 8 (inferred by orthology to a human protein).
     
 0.489
NBR_LOCUS9374
Uncharacterized protein.
     
 0.489
NBR_LOCUS13820
V-SNARE coiled-coil homology domain-containing protein.
     
 0.489
NBR_LOCUS9373
Synaptobrevin-1 (inferred by orthology to a C. elegans protein).
     
 0.489
NBR_LOCUS7006
Serine/threonine-protein phosphatase.
    
  0.463
NBR_LOCUS7612
SER_THR_PHOSPHATASE domain-containing protein.
    
  0.463
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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