STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS3450Ras-related protein Rab-13 (inferred by orthology to a human protein). (63 aa)    
Predicted Functional Partners:
NBR_LOCUS6596
Methyltransf_11 domain-containing protein.
   
 0.988
NBR_LOCUS6581
Putative rab15, 13, 10, 1, 35, 5, and (inferred by orthology to a S. mansoni protein).
   
0.970
NBR_LOCUS6582
Uncharacterized protein.
   
0.970
NBR_LOCUS8891
Protein-methionine sulfoxide oxidase MICAL2 (inferred by orthology to a human protein).
   
 0.942
NBR_LOCUS14453
Uncharacterized protein.
    
 
 0.937
NBR_LOCUS17625
Exocyst complex component 4 (inferred by orthology to a C. elegans protein).
    
 0.920
NBR_LOCUS9413
Guanine nucleotide exchange factor MSS4 (inferred by orthology to a human protein).
    
 
 0.902
NBR_LOCUS12378
Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
    
 0.899
NBR_LOCUS8090
Exocyst complex component 1 (inferred by orthology to a C. elegans protein).
    
 0.897
NBR_LOCUS6374
Exocyst complex component 3 (inferred by orthology to a C. elegans protein).
    
 0.886
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.