NBR_LOCUS3929 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS3929

Uncharacterized protein. (76 aa)

Predicted Functional Partners:

NBR_LOCUS8694

0.620

NBR_LOCUS18452

0.597

NBR_LOCUS13891

0.592

NBR_LOCUS7579

0.539

NBR_LOCUS13333

0.539

NBR_LOCUS1626

0.499

NBR_LOCUS10904

0.499

NBR_LOCUS12389

0.499

NBR_LOCUS14054

0.499

NBR_LOCUS19943

0.499

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS10904	NBR_LOCUS3929	A0A0N4Y4Q6	A0A0N4XN26	Uncharacterized protein.	Uncharacterized protein.	0.499
NBR_LOCUS12389	NBR_LOCUS3929	A0A0N4Y860	A0A0N4XN26	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.499
NBR_LOCUS13333	NBR_LOCUS13891	A0A0N4YAC5	A0A158R1I8	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.884
NBR_LOCUS13333	NBR_LOCUS18452	A0A0N4YAC5	A0A0N4YMN9	Uncharacterized protein.	AP-1 complex subunit gamma-1 (inferred by orthology to a human protein).	0.994
NBR_LOCUS13333	NBR_LOCUS3929	A0A0N4YAC5	A0A0N4XN26	Uncharacterized protein.	Uncharacterized protein.	0.539
NBR_LOCUS13891	NBR_LOCUS13333	A0A158R1I8	A0A0N4YAC5	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.884
NBR_LOCUS13891	NBR_LOCUS18452	A0A158R1I8	A0A0N4YMN9	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-1 complex subunit gamma-1 (inferred by orthology to a human protein).	0.995
NBR_LOCUS13891	NBR_LOCUS3929	A0A158R1I8	A0A0N4XN26	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.592
NBR_LOCUS13891	NBR_LOCUS7579	A0A158R1I8	A0A0N4XX88	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.937
NBR_LOCUS13891	NBR_LOCUS8694	A0A158R1I8	A0A0N4XZR3	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.443
NBR_LOCUS14054	NBR_LOCUS3929	A0A0N4YC11	A0A0N4XN26	3 beta-hydroxysteroid dehydrogenase dhs-16 (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.499
NBR_LOCUS1626	NBR_LOCUS3929	A0A0N4XGH3	A0A0N4XN26	3 beta-hydroxysteroid dehydrogenase dhs-16 (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.499
NBR_LOCUS18452	NBR_LOCUS13333	A0A0N4YMN9	A0A0N4YAC5	AP-1 complex subunit gamma-1 (inferred by orthology to a human protein).	Uncharacterized protein.	0.994
NBR_LOCUS18452	NBR_LOCUS13891	A0A0N4YMN9	A0A158R1I8	AP-1 complex subunit gamma-1 (inferred by orthology to a human protein).	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.995
NBR_LOCUS18452	NBR_LOCUS3929	A0A0N4YMN9	A0A0N4XN26	AP-1 complex subunit gamma-1 (inferred by orthology to a human protein).	Uncharacterized protein.	0.597
NBR_LOCUS18452	NBR_LOCUS7579	A0A0N4YMN9	A0A0N4XX88	AP-1 complex subunit gamma-1 (inferred by orthology to a human protein).	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.998
NBR_LOCUS19943	NBR_LOCUS3929	A0A3P7BA73	A0A0N4XN26	Uncharacterized protein.	Uncharacterized protein.	0.499
NBR_LOCUS3929	NBR_LOCUS10904	A0A0N4XN26	A0A0N4Y4Q6	Uncharacterized protein.	Uncharacterized protein.	0.499
NBR_LOCUS3929	NBR_LOCUS12389	A0A0N4XN26	A0A0N4Y860	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.499
NBR_LOCUS3929	NBR_LOCUS13333	A0A0N4XN26	A0A0N4YAC5	Uncharacterized protein.	Uncharacterized protein.	0.539