STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS3952L-type lectin-like domain-containing protein. (134 aa)    
Predicted Functional Partners:
NBR_LOCUS10616
Suppressor/enhancer of lin-12 protein 9 (inferred by orthology to a C. elegans protein).
   
 0.820
NBR_LOCUS5838
Transmembrane protein tmp21-related (inferred by orthology to a S. mansoni protein).
   
 0.815
NBR_LOCUS12362
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.790
NBR_LOCUS13215
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.790
NBR_LOCUS15848
Protein ERGIC-53-like (inferred by orthology to a human protein).
    
 0.762
NBR_LOCUS5646
Uncharacterized protein.
    
 0.747
NBR_LOCUS7150
BET1 homolog (inferred by orthology to a human protein).
   
 
 0.744
NBR_LOCUS19600
Probable Golgi SNAP receptor complex member 2 (inferred by orthology to a C. elegans protein).
   
 
 0.737
NBR_LOCUS13756
Protein SEC13 homolog (inferred by orthology to a C. elegans protein); Belongs to the WD repeat SEC13 family.
   
 0.724
NBR_LOCUS16750
Putative syntaxin-5 (inferred by orthology to a C. elegans protein); Belongs to the syntaxin family.
     
 0.713
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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