NBR_LOCUS4131 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS4131

Uncharacterized protein. (183 aa)

Predicted Functional Partners:

NBR_LOCUS12326

0.594

NBR_LOCUS18688

0.549

NBR_LOCUS17097

0.538

NBR_LOCUS1802

0.512

NBR_LOCUS17851

0.512

NBR_LOCUS20073

0.512

NBR_LOCUS21026

0.512

NBR_LOCUS21755

0.512

NBR_LOCUS21784

0.512

NBR_LOCUS12450

0.476

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS12326	NBR_LOCUS17097	A0A0N4Y810	A0A0N4YJF8	Aspartate aminotransferase.	Ubiquitin-40S ribosomal protein S27a (inferred by orthology to a human protein).	0.844
NBR_LOCUS12326	NBR_LOCUS17851	A0A0N4Y810	A0A0N4YL86	Aspartate aminotransferase.	Thioredoxin reductase 1 (inferred by orthology to a C. elegans protein); Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.413
NBR_LOCUS12326	NBR_LOCUS1802	A0A0N4Y810	A0A0N4XGZ9	Aspartate aminotransferase.	Probable glutathione reductase 2 (inferred by orthology to a C. elegans protein).	0.413
NBR_LOCUS12326	NBR_LOCUS18688	A0A0N4Y810	A0A3P7BSD5	Aspartate aminotransferase.	Dihydrolipoyl dehydrogenase.	0.500
NBR_LOCUS12326	NBR_LOCUS20073	A0A0N4Y810	A0A0N4YS50	Aspartate aminotransferase.	Glutathione reductase, mitochondrial (inferred by orthology to a human protein).	0.618
NBR_LOCUS12326	NBR_LOCUS21026	A0A0N4Y810	A0A0N4YUV3	Aspartate aminotransferase.	Probable glutathione reductase 2 (inferred by orthology to a C. elegans protein).	0.413
NBR_LOCUS12326	NBR_LOCUS21755	A0A0N4Y810	A0A0N4YWY2	Aspartate aminotransferase.	Glutathione reductase, mitochondrial (inferred by orthology to a human protein).	0.618
NBR_LOCUS12326	NBR_LOCUS21784	A0A0N4Y810	A0A0N4YX11	Aspartate aminotransferase.	Probable glutathione reductase 2 (inferred by orthology to a C. elegans protein).	0.413
NBR_LOCUS12326	NBR_LOCUS4131	A0A0N4Y810	A0A0N4XNN0	Aspartate aminotransferase.	Uncharacterized protein.	0.594
NBR_LOCUS12450	NBR_LOCUS17097	A0A0N4Y8A9	A0A0N4YJF8	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Ubiquitin-40S ribosomal protein S27a (inferred by orthology to a human protein).	0.829
NBR_LOCUS12450	NBR_LOCUS17851	A0A0N4Y8A9	A0A0N4YL86	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Thioredoxin reductase 1 (inferred by orthology to a C. elegans protein); Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.646
NBR_LOCUS12450	NBR_LOCUS1802	A0A0N4Y8A9	A0A0N4XGZ9	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Probable glutathione reductase 2 (inferred by orthology to a C. elegans protein).	0.646
NBR_LOCUS12450	NBR_LOCUS18688	A0A0N4Y8A9	A0A3P7BSD5	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Dihydrolipoyl dehydrogenase.	0.646
NBR_LOCUS12450	NBR_LOCUS20073	A0A0N4Y8A9	A0A0N4YS50	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Glutathione reductase, mitochondrial (inferred by orthology to a human protein).	0.861
NBR_LOCUS12450	NBR_LOCUS21026	A0A0N4Y8A9	A0A0N4YUV3	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Probable glutathione reductase 2 (inferred by orthology to a C. elegans protein).	0.646
NBR_LOCUS12450	NBR_LOCUS21755	A0A0N4Y8A9	A0A0N4YWY2	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Glutathione reductase, mitochondrial (inferred by orthology to a human protein).	0.861
NBR_LOCUS12450	NBR_LOCUS21784	A0A0N4Y8A9	A0A0N4YX11	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Probable glutathione reductase 2 (inferred by orthology to a C. elegans protein).	0.646
NBR_LOCUS12450	NBR_LOCUS4131	A0A0N4Y8A9	A0A0N4XNN0	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Uncharacterized protein.	0.476
NBR_LOCUS17097	NBR_LOCUS12326	A0A0N4YJF8	A0A0N4Y810	Ubiquitin-40S ribosomal protein S27a (inferred by orthology to a human protein).	Aspartate aminotransferase.	0.844
NBR_LOCUS17097	NBR_LOCUS12450	A0A0N4YJF8	A0A0N4Y8A9	Ubiquitin-40S ribosomal protein S27a (inferred by orthology to a human protein).	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	0.829