STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS4241Transcription elongation factor B polypeptide 1 (inferred by orthology to a human protein); Belongs to the SKP1 family. (106 aa)    
Predicted Functional Partners:
NBR_LOCUS16523
Cullin-2 (inferred by orthology to a C. elegans protein); Belongs to the cullin family.
   
 0.992
NBR_LOCUS7669
VHL domain-containing protein.
   
 0.992
NBR_LOCUS3423
RING-box protein 1 (inferred by orthology to a C. elegans protein).
   
 0.991
NBR_LOCUS10905
Cullin-5 (inferred by orthology to a human protein); Belongs to the cullin family.
    
 0.991
NBR_LOCUS8563
Transcription elongation factor B polypeptide 3 (inferred by orthology to a C. elegans protein).
    
 0.987
NBR_LOCUS12489
Uncharacterized protein.
    
 0.980
NBR_LOCUS11587
Suppressor of cytokine signaling at 36E (inferred by orthology to a D. melanogaster protein).
    
 0.979
NBR_LOCUS9790
RING-box protein 2 (inferred by orthology to a human protein).
   
 0.976
NBR_LOCUS10007
Hypoxia-inducible factor 1 (inferred by orthology to a C. elegans protein).
    
 0.973
NBR_LOCUS13158
Suppressor of cytokine signaling 7 (inferred by orthology to a human protein).
    
 0.968
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.