STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS4621Uncharacterized protein. (104 aa)    
Predicted Functional Partners:
NBR_LOCUS18797
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.999
NBR_LOCUS610
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
  
 0.998
NBR_LOCUS15010
Putative H/ACA ribonucleoprotein complex subunit 4 (inferred by orthology to a C. elegans protein).
  
 0.998
NBR_LOCUS43
40S ribosomal protein S28 (inferred by orthology to a C. elegans protein).
  
 0.996
NBR_LOCUS548
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.996
NBR_LOCUS960
40S ribosomal protein S18 (inferred by orthology to a human protein).
  
 0.996
NBR_LOCUS7769
40S ribosomal protein S15 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uS19 family.
  
 0.996
NBR_LOCUS9480
40S ribosomal protein S3 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uS3 family.
  
 0.996
NBR_LOCUS10917
Probable 40S ribosomal protein S14, mitochondrial (inferred by orthology to a C. elegans protein).
  
 0.996
NBR_LOCUS11250
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.996
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.