STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS480139S ribosomal protein L38, mitochondrial (inferred by orthology to a human protein). (223 aa)    
Predicted Functional Partners:
NBR_LOCUS12328
39S ribosomal protein L2, mitochondrial (inferred by orthology to a human protein).
   
 
 0.964
NBR_LOCUS6424
39S ribosomal protein L40, mitochondrial (inferred by orthology to a human protein).
   
 
 0.961
NBR_LOCUS8232
Probable 39S ribosomal protein L19, mitochondrial (inferred by orthology to a C. elegans protein).
   
 
 0.951
NBR_LOCUS11154
Putative 39S ribosomal protein L3, mitochondrial (inferred by orthology to a C. elegans protein).
   
 
 0.951
NBR_LOCUS12335
39S ribosomal protein L18, mitochondrial (inferred by orthology to a C. elegans protein).
   
 
 0.949
NBR_LOCUS2925
39S ribosomal protein L44, mitochondrial (inferred by orthology to a human protein).
   
 
 0.946
NBR_LOCUS8658
Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.
   
 
 0.946
NBR_LOCUS7041
RIBOSOMAL_L9 domain-containing protein.
   
 
 0.942
NBR_LOCUS5619
39S ribosomal protein L28, mitochondrial (inferred by orthology to a human protein).
   
 
 0.936
NBR_LOCUS16640
Uncharacterized protein.
   
 
 0.936
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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