NBR_LOCUS5037 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS5037

Uncharacterized protein. (84 aa)

Predicted Functional Partners:

NBR_LOCUS6003

0.996

NBR_LOCUS13163

0.662

NBR_LOCUS9408

0.625

NBR_LOCUS12746

0.621

NBR_LOCUS22715

0.614

NBR_LOCUS20541

0.614

NBR_LOCUS13972

0.587

NBR_LOCUS21095

0.587

NBR_LOCUS13436

0.583

NBR_LOCUS6624

0.579

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS12746	NBR_LOCUS13163	A0A0N4Y8Z9	A0A158R164	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	AFG3-like protein 2 (inferred by orthology to a human protein).	0.603
NBR_LOCUS12746	NBR_LOCUS13436	A0A0N4Y8Z9	A0A0N4YAL3	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	Peptide methionine sulfoxide reductase (inferred by orthology to a D. melanogaster protein).	0.568
NBR_LOCUS12746	NBR_LOCUS13972	A0A0N4Y8Z9	A0A0N4YBU8	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	Paraplegin (inferred by orthology to a human protein).	0.603
NBR_LOCUS12746	NBR_LOCUS20541	A0A0N4Y8Z9	A0A0N4YTG8	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	ATP-dependent zinc metalloprotease YME1 homolog (inferred by orthology to a C. elegans protein).	0.620
NBR_LOCUS12746	NBR_LOCUS21095	A0A0N4Y8Z9	A0A0N4YV22	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	Paraplegin (inferred by orthology to a human protein).	0.603
NBR_LOCUS12746	NBR_LOCUS22715	A0A0N4Y8Z9	A0A0N4XJ73	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	ATP-dependent zinc metalloprotease YME1 homolog (inferred by orthology to a C. elegans protein).	0.620
NBR_LOCUS12746	NBR_LOCUS5037	A0A0N4Y8Z9	A0A0N4XR83	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	Uncharacterized protein.	0.621
NBR_LOCUS12746	NBR_LOCUS6003	A0A0N4Y8Z9	A0A0N4XTP9	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	ATP-dependent Clp protease proteolytic subunit.	0.921
NBR_LOCUS12746	NBR_LOCUS6624	A0A0N4Y8Z9	A0A158QXC7	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.637
NBR_LOCUS12746	NBR_LOCUS9408	A0A0N4Y8Z9	A0A0N4Y1C2	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.695
NBR_LOCUS13163	NBR_LOCUS12746	A0A158R164	A0A0N4Y8Z9	AFG3-like protein 2 (inferred by orthology to a human protein).	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	0.603
NBR_LOCUS13163	NBR_LOCUS13972	A0A158R164	A0A0N4YBU8	AFG3-like protein 2 (inferred by orthology to a human protein).	Paraplegin (inferred by orthology to a human protein).	0.849
NBR_LOCUS13163	NBR_LOCUS20541	A0A158R164	A0A0N4YTG8	AFG3-like protein 2 (inferred by orthology to a human protein).	ATP-dependent zinc metalloprotease YME1 homolog (inferred by orthology to a C. elegans protein).	0.537
NBR_LOCUS13163	NBR_LOCUS21095	A0A158R164	A0A0N4YV22	AFG3-like protein 2 (inferred by orthology to a human protein).	Paraplegin (inferred by orthology to a human protein).	0.848
NBR_LOCUS13163	NBR_LOCUS22715	A0A158R164	A0A0N4XJ73	AFG3-like protein 2 (inferred by orthology to a human protein).	ATP-dependent zinc metalloprotease YME1 homolog (inferred by orthology to a C. elegans protein).	0.540
NBR_LOCUS13163	NBR_LOCUS5037	A0A158R164	A0A0N4XR83	AFG3-like protein 2 (inferred by orthology to a human protein).	Uncharacterized protein.	0.662
NBR_LOCUS13163	NBR_LOCUS6003	A0A158R164	A0A0N4XTP9	AFG3-like protein 2 (inferred by orthology to a human protein).	ATP-dependent Clp protease proteolytic subunit.	0.705
NBR_LOCUS13163	NBR_LOCUS6624	A0A158R164	A0A158QXC7	AFG3-like protein 2 (inferred by orthology to a human protein).	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.609
NBR_LOCUS13436	NBR_LOCUS12746	A0A0N4YAL3	A0A0N4Y8Z9	Peptide methionine sulfoxide reductase (inferred by orthology to a D. melanogaster protein).	GrpE protein homolog, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the GrpE family.	0.568
NBR_LOCUS13436	NBR_LOCUS5037	A0A0N4YAL3	A0A0N4XR83	Peptide methionine sulfoxide reductase (inferred by orthology to a D. melanogaster protein).	Uncharacterized protein.	0.583