STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS6436FYVE-type domain-containing protein. (409 aa)    
Predicted Functional Partners:
NBR_LOCUS5660
Receptor-mediated endocytosis protein 6 (inferred by orthology to a C. elegans protein).
   
 0.995
NBR_LOCUS14910
Ras-related protein Rab-17 (inferred by orthology to a human protein).
    
 0.990
NBR_LOCUS9224
Zinc finger protein, putative (inferred by orthology to a S. mansoni protein).
   
 0.984
NBR_LOCUS17480
Uncharacterized protein.
    
 0.984
NBR_LOCUS11005
VPS9 domain-containing protein.
    
 0.984
NBR_LOCUS11976
Uncharacterized protein.
    
 0.984
NBR_LOCUS7477
Uncharacterized protein.
    
 0.982
NBR_LOCUS7479
Uncharacterized protein.
    
 0.982
NBR_LOCUS8345
Target of myb1 related (inferred by orthology to a S. mansoni protein).
    
 0.954
NBR_LOCUS19357
DH domain-containing protein.
    
 
 0.820
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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