STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS6583BTB domain-containing protein. (645 aa)    
Predicted Functional Partners:
NBR_LOCUS12186
Uncoordinated protein 79 (inferred by orthology to a C. elegans protein).
      
 0.549
NBR_LOCUS16907
Uncoordinated protein 79 (inferred by orthology to a C. elegans protein).
      
 0.549
NBR_LOCUS8694
Uncharacterized protein.
      
 0.537
NBR_LOCUS122
Dymeclin (inferred by orthology to a human protein).
      
 0.514
NBR_LOCUS5746
Putative E3 ubiquitin-protein ligase UBR7 (inferred by orthology to a human protein).
      
 0.491
NBR_LOCUS8276
Cullin-3 (inferred by orthology to a C. elegans protein); Belongs to the cullin family.
   
  
 0.479
NBR_LOCUS13653
Uncharacterized protein.
      
 0.461
NBR_LOCUS8135
SUMO-conjugating enzyme UBC9 (inferred by orthology to a C. elegans protein); Belongs to the ubiquitin-conjugating enzyme family.
      
 0.461
NBR_LOCUS10558
Egg-laying defective protein 27 (inferred by orthology to a C. elegans protein).
      
 0.443
NBR_LOCUS10241
DnaJ homolog subfamily C member 16 (inferred by orthology to a human protein).
      
 0.432
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.