NBR_LOCUS7996 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS7996

Uncharacterized protein. (125 aa)

Predicted Functional Partners:

NBR_LOCUS6060

0.825

NBR_LOCUS12814

0.824

NBR_LOCUS12071

0.806

NBR_LOCUS17965

0.746

NBR_LOCUS12130

0.746

NBR_LOCUS795

0.678

NBR_LOCUS7798

0.678

NBR_LOCUS12875

0.678

NBR_LOCUS13276

0.678

NBR_LOCUS13278

0.678

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS12071	NBR_LOCUS12130	A0A158R0L7	A0A3P7AMA8	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Uncharacterized protein.	0.832
NBR_LOCUS12071	NBR_LOCUS12814	A0A158R0L7	A0A0N4Y954	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	0.895
NBR_LOCUS12071	NBR_LOCUS17965	A0A158R0L7	A0A0N4YLH5	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Uncharacterized protein.	0.832
NBR_LOCUS12071	NBR_LOCUS7996	A0A158R0L7	A0A0N4XY62	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Uncharacterized protein.	0.806
NBR_LOCUS12130	NBR_LOCUS12071	A0A3P7AMA8	A0A158R0L7	Uncharacterized protein.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.832
NBR_LOCUS12130	NBR_LOCUS12814	A0A3P7AMA8	A0A0N4Y954	Uncharacterized protein.	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	0.962
NBR_LOCUS12130	NBR_LOCUS13276	A0A3P7AMA8	A0A0N4YA79	Uncharacterized protein.	PDE4_UCR domain-containing protein.	0.678
NBR_LOCUS12130	NBR_LOCUS13278	A0A3P7AMA8	A0A0N4YA81	Uncharacterized protein.	PDE4_UCR domain-containing protein.	0.678
NBR_LOCUS12130	NBR_LOCUS6060	A0A3P7AMA8	A0A0N4XTU7	Uncharacterized protein.	Uncharacterized protein.	0.825
NBR_LOCUS12130	NBR_LOCUS7798	A0A3P7AMA8	A0A0N4XXQ8	Uncharacterized protein.	Probable 3',5'-cyclic phosphodiesterase pde-4 (inferred by orthology to a C. elegans protein); Belongs to the cyclic nucleotide phosphodiesterase family.	0.678
NBR_LOCUS12130	NBR_LOCUS7996	A0A3P7AMA8	A0A0N4XY62	Uncharacterized protein.	Uncharacterized protein.	0.746
NBR_LOCUS12814	NBR_LOCUS12071	A0A0N4Y954	A0A158R0L7	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.895
NBR_LOCUS12814	NBR_LOCUS12130	A0A0N4Y954	A0A3P7AMA8	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.962
NBR_LOCUS12814	NBR_LOCUS12875	A0A0N4Y954	A0A0N4Y9A7	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	Phosphodiesterase.	0.931
NBR_LOCUS12814	NBR_LOCUS13276	A0A0N4Y954	A0A0N4YA79	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	PDE4_UCR domain-containing protein.	0.808
NBR_LOCUS12814	NBR_LOCUS13278	A0A0N4Y954	A0A0N4YA81	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	PDE4_UCR domain-containing protein.	0.808
NBR_LOCUS12814	NBR_LOCUS17965	A0A0N4Y954	A0A0N4YLH5	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.904
NBR_LOCUS12814	NBR_LOCUS6060	A0A0N4Y954	A0A0N4XTU7	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.917
NBR_LOCUS12814	NBR_LOCUS7798	A0A0N4Y954	A0A0N4XXQ8	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	Probable 3',5'-cyclic phosphodiesterase pde-4 (inferred by orthology to a C. elegans protein); Belongs to the cyclic nucleotide phosphodiesterase family.	0.808
NBR_LOCUS12814	NBR_LOCUS795	A0A0N4Y954	A0A0N4XE42	Adenine phosphoribosyltransferase (inferred by orthology to a C. elegans protein).	GAF domain-containing protein.	0.827