STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS8073Required for meiotic nuclear division protein 1 homolog (inferred by orthology to a human protein). (247 aa)    
Predicted Functional Partners:
NBR_LOCUS10167
Mitochondrial ribosome-associated GTPase 2 (inferred by orthology to a human protein).
   
  
 0.572
NBR_LOCUS21590
U3 small nucleolar RNA-associated protein 15 homolog (inferred by orthology to a human protein).
      
 0.549
NBR_LOCUS9229
Uncharacterized protein.
   
  
 0.543
NBR_LOCUS8280
Twinkle protein, mitochondrial (inferred by orthology to a human protein).
      
 0.531
NBR_LOCUS7147
RF_PROK_I domain-containing protein.
   
  
 0.513
NBR_LOCUS6785
Uncharacterized protein.
   
  
 0.504
NBR_LOCUS21276
Uncharacterized protein.
      
 0.485
NBR_LOCUS18683
Uncharacterized protein.
      
 0.485
NBR_LOCUS10623
Phenylalanine--tRNA ligase, mitochondrial (inferred by orthology to a human protein).
   
  
 0.475
NBR_LOCUS3393
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
   
  
 0.467
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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