STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS8093DDB1- and CUL4-associated factor homolog 1 (inferred by orthology to a C. elegans protein). (1050 aa)    
Predicted Functional Partners:
NBR_LOCUS3518
CPSF_A domain-containing protein.
    
 0.991
NBR_LOCUS4069
Cullin-4 (inferred by orthology to a D. melanogaster protein); Belongs to the cullin family.
   
 0.991
NBR_LOCUS4188
Cullin-4 (inferred by orthology to a C. elegans protein); Belongs to the cullin family.
   
 0.991
NBR_LOCUS16361
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.991
NBR_LOCUS18760
CPSF_A domain-containing protein.
    
 0.991
NBR_LOCUS19429
DNA damage-binding protein 1 (inferred by orthology to a C. elegans protein).
    
 0.991
NBR_LOCUS2982
FAT domain-containing protein.
   
 0.989
NBR_LOCUS6796
Uncharacterized protein.
    
 
 0.983
NBR_LOCUS3423
RING-box protein 1 (inferred by orthology to a C. elegans protein).
    
 
 0.982
NBR_LOCUS11997
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
    
 
 0.973
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.