STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS9440Thioredoxin; Belongs to the thioredoxin family. (135 aa)    
Predicted Functional Partners:
NBR_LOCUS13436
Peptide methionine sulfoxide reductase (inferred by orthology to a D. melanogaster protein).
   
 0.983
NBR_LOCUS20138
Thioredoxin-1 (inferred by orthology to a C. elegans protein).
  
0.962
NBR_LOCUS21418
Thioredoxin-1 (inferred by orthology to a C. elegans protein).
  
0.961
NBR_LOCUS6287
Uncharacterized protein.
  
0.950
NBR_LOCUS11155
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.941
NBR_LOCUS3871
Probable 39S ribosomal protein L11, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL11 family.
   
   0.936
NBR_LOCUS18393
Probable 39S ribosomal protein L11, mitochondrial (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL11 family.
   
   0.936
NBR_LOCUS17911
Sulfite oxidase, mitochondrial (inferred by orthology to a human protein).
   
 0.912
NBR_LOCUS20295
Sulfite oxidase, mitochondrial (inferred by orthology to a human protein); Belongs to the cytochrome b5 family.
   
 0.912
NBR_LOCUS20296
Sulfite oxidase, mitochondrial (inferred by orthology to a human protein).
   
 0.912
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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