STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS948040S ribosomal protein S3 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uS3 family. (252 aa)    
Predicted Functional Partners:
NBR_LOCUS43
40S ribosomal protein S28 (inferred by orthology to a C. elegans protein).
   
 0.999
NBR_LOCUS338
Ubiquitin-60S ribosomal protein L40 (inferred by orthology to a C. elegans protein).
   
 0.999
NBR_LOCUS433
39S ribosomal protein L21, mitochondrial (inferred by orthology to a human protein).
  
 
 0.999
NBR_LOCUS502
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 
 0.999
NBR_LOCUS548
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.999
NBR_LOCUS708
S1-like domain-containing protein.
  
 0.999
NBR_LOCUS959
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
  
 
 0.999
NBR_LOCUS960
40S ribosomal protein S18 (inferred by orthology to a human protein).
  
 0.999
NBR_LOCUS1194
60S ribosomal protein L12 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL11 family.
  
 
 0.999
NBR_LOCUS1308
S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
  
 0.999
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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