STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS10159Putative ATP-dependent RNA helicase (inferred by orthology to a C. elegans protein). (854 aa)    
Predicted Functional Partners:
NBR_LOCUS14264
Uncharacterized protein.
    
 0.956
NBR_LOCUS6609
Probable ATP-dependent RNA helicase DDX52 (inferred by orthology to a human protein).
  
0.889
NBR_LOCUS952
Sas10 domain-containing protein.
   
 0.878
NBR_LOCUS19194
Sas10 domain-containing protein.
   
 0.878
NBR_LOCUS22114
Ribosome biogenesis protein BOP1 homolog (inferred by orthology to a C. elegans protein).
   
 0.868
NBR_LOCUS15166
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.868
NBR_LOCUS310
Probable RNA-binding protein 19 (inferred by orthology to a human protein).
   
 
 0.858
NBR_LOCUS14917
Probable ATP-dependent RNA helicase DDX56 (inferred by orthology to a human protein).
  
 
0.855
NBR_LOCUS17096
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 0.847
NBR_LOCUS5645
WD_REPEATS_REGION domain-containing protein.
   
 0.844
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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