NBR_LOCUS10575 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS10575

UDENN domain-containing protein. (614 aa)

Predicted Functional Partners:

NBR_LOCUS18116

0.994

NBR_LOCUS6712

0.845

NBR_LOCUS19031

0.765

NBR_LOCUS6596

0.760

NBR_LOCUS14929

0.732

NBR_LOCUS19357

0.702

NBR_LOCUS7414

0.688

NBR_LOCUS3450

0.675

NBR_LOCUS6699

0.675

NBR_LOCUS21314

0.675

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS10575	NBR_LOCUS14929	A0A0N4Y3Z5	A0A0N4YE36	UDENN domain-containing protein.	Uncharacterized protein.	0.732
NBR_LOCUS10575	NBR_LOCUS18116	A0A0N4Y3Z5	A0A0N4YLV7	UDENN domain-containing protein.	Uncharacterized protein.	0.994
NBR_LOCUS10575	NBR_LOCUS19031	A0A0N4Y3Z5	A0A0N4YP60	UDENN domain-containing protein.	Uncharacterized protein.	0.765
NBR_LOCUS10575	NBR_LOCUS19357	A0A0N4Y3Z5	A0A0N4YQ34	UDENN domain-containing protein.	DH domain-containing protein.	0.702
NBR_LOCUS10575	NBR_LOCUS21314	A0A0N4Y3Z5	A0A0N4YVP1	UDENN domain-containing protein.	Ras-related protein Rab-10 (inferred by orthology to a human protein).	0.675
NBR_LOCUS10575	NBR_LOCUS3450	A0A0N4Y3Z5	A0A0N4XLP6	UDENN domain-containing protein.	Ras-related protein Rab-13 (inferred by orthology to a human protein).	0.675
NBR_LOCUS10575	NBR_LOCUS6596	A0A0N4Y3Z5	A0A0N4XV13	UDENN domain-containing protein.	Methyltransf_11 domain-containing protein.	0.760
NBR_LOCUS10575	NBR_LOCUS6699	A0A0N4Y3Z5	A0A0N4XV93	UDENN domain-containing protein.	Uncharacterized protein.	0.675
NBR_LOCUS10575	NBR_LOCUS6712	A0A0N4Y3Z5	A0A0N4XVA6	UDENN domain-containing protein.	14-3-3-like protein 2 (inferred by orthology to a C. elegans protein); Belongs to the 14-3-3 family.	0.845
NBR_LOCUS10575	NBR_LOCUS7414	A0A0N4Y3Z5	A0A0N4XWV9	UDENN domain-containing protein.	Ras-related protein Rab-7a (inferred by orthology to a human protein).	0.688
NBR_LOCUS14929	NBR_LOCUS10575	A0A0N4YE36	A0A0N4Y3Z5	Uncharacterized protein.	UDENN domain-containing protein.	0.732
NBR_LOCUS14929	NBR_LOCUS18116	A0A0N4YE36	A0A0N4YLV7	Uncharacterized protein.	Uncharacterized protein.	0.538
NBR_LOCUS14929	NBR_LOCUS19031	A0A0N4YE36	A0A0N4YP60	Uncharacterized protein.	Uncharacterized protein.	0.802
NBR_LOCUS14929	NBR_LOCUS19357	A0A0N4YE36	A0A0N4YQ34	Uncharacterized protein.	DH domain-containing protein.	0.659
NBR_LOCUS14929	NBR_LOCUS6596	A0A0N4YE36	A0A0N4XV13	Uncharacterized protein.	Methyltransf_11 domain-containing protein.	0.930
NBR_LOCUS14929	NBR_LOCUS6712	A0A0N4YE36	A0A0N4XVA6	Uncharacterized protein.	14-3-3-like protein 2 (inferred by orthology to a C. elegans protein); Belongs to the 14-3-3 family.	0.621
NBR_LOCUS14929	NBR_LOCUS7414	A0A0N4YE36	A0A0N4XWV9	Uncharacterized protein.	Ras-related protein Rab-7a (inferred by orthology to a human protein).	0.734
NBR_LOCUS18116	NBR_LOCUS10575	A0A0N4YLV7	A0A0N4Y3Z5	Uncharacterized protein.	UDENN domain-containing protein.	0.994
NBR_LOCUS18116	NBR_LOCUS14929	A0A0N4YLV7	A0A0N4YE36	Uncharacterized protein.	Uncharacterized protein.	0.538
NBR_LOCUS18116	NBR_LOCUS19031	A0A0N4YLV7	A0A0N4YP60	Uncharacterized protein.	Uncharacterized protein.	0.879